Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase involved in cell wall bisynthesis | SAMN04488101_102573 | Not Available | + | 1675050 - 1677101 | 78941.3 |
| glycosyl transferase family 2 | SAMN04488101_102574 | Not Available | + | 1677135 - 1678136 | 38123.9 |
| core-2/i-branching enzyme | SAMN04488101_102575 | Not Available | - | 1678151 - 1679002 | 33291.2 |
| arac-type dna-binding protein | SAMN04488101_102576 | Not Available | - | 1679189 - 1680088 | 34489.2 |
| sugar phosphate isomerase/epimerase | SAMN04488101_102577 | Not Available | + | 1680273 - 1681157 | 33136.7 |
| l-alanine-dl-glutamate epimerase | SAMN04488101_102578 | Not Available | + | 1681212 - 1682378 | 42003.6 |
| catechol 2,3-dioxygenase | SAMN04488101_102579 | Not Available | + | 1682389 - 1682880 | 18969.6 |
| d-3-phosphoglycerate dehydrogenase | SAMN04488101_102580 | Not Available | + | 1683019 - 1683951 | 33735.9 |
| trehalose utilisation | SAMN04488101_102581 | Not Available | + | 1683973 - 1684830 | 31640.2 |
| putative membrane-bound dehydrogenase domain-containing protein | SAMN04488101_102582 | Not Available | + | 1684845 - 1688063 | 120303.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.