Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| peptidase family m28 | SAMN04488101_102563 | Not Available | + | 1664487 - 1665443 | 35105.8 |
| l-amino acid n-acyltransferase ynca | SAMN04488101_102564 | Not Available | - | 1665440 - 1665934 | 18637.5 |
| thiamine pyrophosphokinase | SAMN04488101_102565 | Not Available | - | 1665931 - 1666494 | 21285.2 |
| gliding motility-associated c-terminal domain-containing protein | SAMN04488101_102566 | Not Available | - | 1666527 - 1669400 | 103665.0 |
| hypothetical protein | SAMN04488101_102567 | Not Available | - | 1669574 - 1669918 | 13533.2 |
| probable oxidoreductase, llm family | SAMN04488101_102568 | Not Available | - | 1669979 - 1671010 | 37744.7 |
| methyltransferase domain-containing protein | SAMN04488101_102569 | Not Available | + | 1671190 - 1671933 | 27888.3 |
| polysaccharide deacetylase | SAMN04488101_102570 | Not Available | + | 1671938 - 1672903 | 36914.0 |
| lipopolysaccharide transport system permease protein | SAMN04488101_102571 | Not Available | + | 1672904 - 1673770 | 33617.8 |
| lipopolysaccharide transport system atp-binding protein | SAMN04488101_102572 | Not Available | + | 1673781 - 1675046 | 46977.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.