Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| metallo-beta-lactamase family protein | SAMN04488101_102553 | Not Available | + | 1655780 - 1657177 | 51928.1 |
| methyltransferase domain-containing protein | SAMN04488101_102554 | Not Available | + | 1657205 - 1657906 | 26423.8 |
| tripeptide aminopeptidase | SAMN04488101_102555 | Not Available | - | 1657933 - 1659186 | 45825.2 |
| outer membrane protein beta-barrel domain-containing protein | SAMN04488101_102556 | Not Available | + | 1659254 - 1659961 | 25836.7 |
| membrane associated serine protease, rhomboid family | SAMN04488101_102557 | Not Available | + | 1659978 - 1660595 | 23243.9 |
| hypothetical protein | SAMN04488101_102558 | Not Available | - | 1660592 - 1661581 | 37834.2 |
| l-alanine-dl-glutamate epimerase | SAMN04488101_102559 | Not Available | + | 1661647 - 1662723 | 39545.9 |
| hypothetical protein | SAMN04488101_102560 | Not Available | - | 1662707 - 1662898 | 7347.44 |
| rhodanese-related sulfurtransferase | SAMN04488101_102561 | Not Available | - | 1662901 - 1663221 | 11994.4 |
| protein of unknown function | SAMN04488101_102562 | Not Available | + | 1663387 - 1664469 | 40783.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.