Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| atp-binding cassette, subfamily b | SAMN04488101_102543 | Not Available | - | 1647377 - 1649128 | 65365.8 |
| ribosome recycling factor | SAMN04488101_102544 | Not Available | - | 1649238 - 1649801 | 20898.3 |
| uridylate kinase | SAMN04488101_102545 | Not Available | - | 1649842 - 1650549 | 25823.6 |
| n-acetylglucosamine 6-phosphate deacetylase | SAMN04488101_102546 | Not Available | - | 1650588 - 1651694 | 40366.6 |
| elongation factor ts | SAMN04488101_102547 | Not Available | - | 1651780 - 1652619 | 30112.9 |
| ssu ribosomal protein s2p | SAMN04488101_102548 | Not Available | - | 1652716 - 1653540 | 30464.9 |
| small subunit ribosomal protein s9 | SAMN04488101_102549 | Not Available | - | 1653559 - 1653945 | 14240.5 |
| lsu ribosomal protein l13p | SAMN04488101_102550 | Not Available | - | 1653957 - 1654400 | 16202.9 |
| hypothetical protein | SAMN04488101_102551 | Not Available | + | 1654988 - 1655407 | 15181.1 |
| ytxh-like protein | SAMN04488101_102552 | Not Available | + | 1655564 - 1655770 | 7209.85 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.