Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dna repair protein rada/sms | SAMN04488101_102532 | Not Available | + | 1634726 - 1636153 | 52235.1 |
| lema protein | SAMN04488101_102533 | Not Available | + | 1636444 - 1637001 | 20720.3 |
| protein of unknown function | SAMN04488101_102534 | Not Available | + | 1637001 - 1637966 | 36342.9 |
| carbamoyl-phosphate synthase large subunit | SAMN04488101_102535 | Not Available | - | 1638058 - 1640874 | 104468.0 |
| hypothetical protein | SAMN04488101_102536 | Not Available | - | 1641093 - 1641440 | 12319.2 |
| nicotinamide mononucleotide transporter | SAMN04488101_102537 | Not Available | + | 1641499 - 1642164 | 25755.4 |
| nicotinamide-nucleotide adenylyltransferase, nadr type | SAMN04488101_102538 | Not Available | + | 1642148 - 1642678 | 20496.4 |
| iron complex outermembrane recepter protein | SAMN04488101_102540 | Not Available | + | 1642939 - 1645383 | 91304.8 |
| thiamine-phosphate diphosphorylase | SAMN04488101_102541 | Not Available | + | 1645405 - 1646037 | 23042.5 |
| transmembrane secretion effector | SAMN04488101_102542 | Not Available | + | 1646106 - 1647380 | 46831.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.