Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| l-aspartate 1-decarboxylase | SAMN04488101_102522 | Not Available | - | 1624335 - 1624685 | 12942.8 |
| pantoate--beta-alanine ligase | SAMN04488101_102523 | Not Available | - | 1624729 - 1625595 | 32167.5 |
| starch synthase | SAMN04488101_102524 | Not Available | + | 1625721 - 1626545 | 31748.1 |
| protein of unknown function | SAMN04488101_102525 | Not Available | + | 1626569 - 1628005 | 51844.9 |
| glucosamine--fructose-6-phosphate aminotransferase (isomerizing) | SAMN04488101_102526 | Not Available | + | 1628091 - 1629929 | 67675.7 |
| single-strand binding protein | SAMN04488101_102527 | Not Available | - | 1629991 - 1630416 | 15844.7 |
| a/g-specific dna-adenine glycosylase | SAMN04488101_102528 | Not Available | - | 1630431 - 1631480 | 40226.0 |
| dna-binding protein hu-beta | SAMN04488101_102529 | Not Available | + | 1631654 - 1631956 | 11076.5 |
| tpr repeat-containing protein | SAMN04488101_102530 | Not Available | + | 1631962 - 1632828 | 30996.6 |
| ribonuclease g | SAMN04488101_102531 | Not Available | + | 1633078 - 1634628 | 58581.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.