Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488101_102492 | Not Available | - | 1591919 - 1592548 | 23207.7 |
| protein of unknown function | SAMN04488101_102493 | Not Available | - | 1592660 - 1593229 | 21209.3 |
| protein tyrosine phosphatase | SAMN04488101_102494 | Not Available | - | 1593239 - 1593676 | 17081.3 |
| s1/p1 nuclease | SAMN04488101_102495 | Not Available | - | 1593696 - 1594508 | 30399.8 |
| hypothetical protein | SAMN04488101_102496 | Not Available | - | 1594627 - 1595127 | 18887.8 |
| fumarase, class ii | SAMN04488101_102497 | Not Available | - | 1595146 - 1596543 | 50048.1 |
| cubico group peptidase, beta-lactamase class c family | SAMN04488101_102498 | Not Available | + | 1596706 - 1597950 | 47374.2 |
| atp-dependent dna helicase recg | SAMN04488101_102499 | Not Available | - | 1597951 - 1600056 | 79954.1 |
| chloramphenicol-sensitive protein rard | SAMN04488101_102500 | Not Available | - | 1600147 - 1601058 | 34274.2 |
| 2-iminobutanoate/2-iminopropanoate deaminase | SAMN04488101_102501 | Not Available | - | 1601062 - 1601442 | 13921.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.