Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| snoal-like domain-containing protein | SAMN04488101_102482 | Not Available | + | 1581482 - 1581952 | 17869.1 |
| histidyl-trna synthetase | SAMN04488101_102483 | Not Available | - | 1581953 - 1583338 | 51377.0 |
| pyruvate dehydrogenase e2 component (dihydrolipoamide acetyltransferase) | SAMN04488101_102484 | Not Available | - | 1583454 - 1585076 | 56860.0 |
| pyruvate dehydrogenase e1 component alpha subunit | SAMN04488101_102485 | Not Available | - | 1585134 - 1586129 | 36935.2 |
| hypothetical protein | SAMN04488101_102486 | Not Available | + | 1586202 - 1586384 | 6829.26 |
| lipoprotein spr | SAMN04488101_102487 | Not Available | + | 1586524 - 1587078 | 20866.0 |
| capsule synthesis protein pga_cap | SAMN04488101_102488 | Not Available | + | 1587148 - 1588248 | 39854.7 |
| hypothetical protein | SAMN04488101_102489 | Not Available | - | 1588245 - 1588430 | 6547.25 |
| regulator of protease activity hflc, stomatin/prohibitin superfamily | SAMN04488101_102490 | Not Available | + | 1588572 - 1589501 | 34607.0 |
| carboxyl-terminal processing protease | SAMN04488101_102491 | Not Available | - | 1589587 - 1591845 | 84171.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.