Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| putative atpase | SAMN04488101_102472 | Not Available | + | 1570294 - 1571574 | 47051.8 |
| hypothetical protein | SAMN04488101_102473 | Not Available | + | 1571576 - 1573051 | 55774.9 |
| abc-2 type transport system atp-binding protein | SAMN04488101_102474 | Not Available | + | 1573137 - 1573835 | 26291.5 |
| outer membrane protein ompa | SAMN04488101_102475 | Not Available | + | 1573999 - 1574679 | 23213.9 |
| hypothetical protein | SAMN04488101_102476 | Not Available | - | 1574779 - 1575144 | 13985.0 |
| predicted dehydrogenase | SAMN04488101_102477 | Not Available | + | 1575283 - 1576296 | 37878.1 |
| hypothetical protein | SAMN04488101_102478 | Not Available | + | 1576300 - 1577082 | 30009.2 |
| pimeloyl-acp methyl ester carboxylesterase | SAMN04488101_102479 | Not Available | - | 1577084 - 1578073 | 36801.8 |
| iron complex outermembrane recepter protein | SAMN04488101_102480 | Not Available | - | 1578380 - 1580680 | 84309.5 |
| hypothetical protein | SAMN04488101_102481 | Not Available | - | 1581171 - 1581317 | 5313.86 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.