Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| serine protease, s1-c subfamily, contains c-terminal pdz domain | SAMN04488101_102452 | Not Available | - | 1545323 - 1546864 | 53735.1 |
| diaminopimelate epimerase | SAMN04488101_102453 | Not Available | + | 1547021 - 1547806 | 29174.4 |
| helicase | SAMN04488101_102454 | Not Available | - | 1547821 - 1550124 | 86789.7 |
| protein of unknown function | SAMN04488101_102455 | Not Available | - | 1550148 - 1551950 | 68179.6 |
| outer membrane receptor proteins, mostly fe transport | SAMN04488101_102456 | Not Available | + | 1552100 - 1554844 | 101787.0 |
| glpgli family protein | SAMN04488101_102457 | Not Available | + | 1554856 - 1555614 | 28016.0 |
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN04488101_102458 | Not Available | - | 1555611 - 1556306 | 26604.5 |
| two-component system, ompr family, phosphate regulon sensor histidine kinase phor | SAMN04488101_102459 | Not Available | - | 1556306 - 1558105 | 69228.6 |
| hypothetical protein | SAMN04488101_102460 | Not Available | + | 1558250 - 1558990 | 27582.5 |
| protein of unknown function | SAMN04488101_102461 | Not Available | - | 1559137 - 1559505 | 13582.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.