Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| nudix domain-containing protein | SAMN04488101_102442 | Not Available | + | 1535389 - 1535943 | 20844.8 |
| 1-acyl-sn-glycerol-3-phosphate acyltransferase | SAMN04488101_102443 | Not Available | + | 1535968 - 1536714 | 28125.5 |
| two component transcriptional regulator, lyttr family | SAMN04488101_102444 | Not Available | - | 1536715 - 1537467 | 28448.8 |
| histidine kinase | SAMN04488101_102445 | Not Available | - | 1537464 - 1538498 | 39892.1 |
| hypothetical protein | SAMN04488101_102446 | Not Available | + | 1538732 - 1538905 | 6287.81 |
| predicted transcriptional regulator | SAMN04488101_102447 | Not Available | + | 1539203 - 1539580 | 14734.8 |
| outer membrane transport energization protein tonb | SAMN04488101_102448 | Not Available | + | 1539577 - 1541556 | 73700.1 |
| succinate dehydrogenase / fumarate reductase iron-sulfur subunit | SAMN04488101_102449 | Not Available | - | 1541644 - 1542414 | 27824.2 |
| succinate dehydrogenase subunit a | SAMN04488101_102450 | Not Available | - | 1542441 - 1544420 | 73508.2 |
| succinate dehydrogenase / fumarate reductase cytochrome b subunit | SAMN04488101_102451 | Not Available | - | 1544446 - 1545126 | 25119.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.