Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 4'-phosphopantetheinyl transferase superfamily protein | SAMN04488101_102432 | Not Available | - | 1522610 - 1523269 | 25259.8 |
| dctp deaminase | SAMN04488101_102433 | Not Available | + | 1523322 - 1523858 | 20052.2 |
| tonb-dependent receptor plug domain | SAMN04488101_102434 | Not Available | + | 1523938 - 1526640 | 99268.7 |
| enoyl-coa hydratase/carnithine racemase | SAMN04488101_102435 | Not Available | + | 1526651 - 1527412 | 28019.0 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN04488101_102436 | Not Available | + | 1527416 - 1528291 | 31256.7 |
| 3-oxoacyl-[acyl-carrier-protein] synthase-3 | SAMN04488101_102437 | Not Available | - | 1528295 - 1529341 | 38224.8 |
| atp-dependent clp protease adaptor protein clps | SAMN04488101_102438 | Not Available | + | 1529422 - 1529703 | 10871.0 |
| thioredoxin | SAMN04488101_102439 | Not Available | - | 1529719 - 1530324 | 22565.3 |
| outer membrane receptor proteins, mostly fe transport | SAMN04488101_102440 | Not Available | + | 1530420 - 1532912 | 92360.5 |
| outer membrane receptor proteins, mostly fe transport | SAMN04488101_102441 | Not Available | + | 1532940 - 1535354 | 89079.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.