Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized conserved protein, duf58 family, contains vwf domain | SAMN04488101_102422 | Not Available | - | 1513346 - 1514692 | 52378.7 |
| moxr-like atpase | SAMN04488101_102423 | Not Available | - | 1514705 - 1515682 | 36255.2 |
| hypothetical protein | SAMN04488101_102424 | Not Available | - | 1515686 - 1516861 | 44827.5 |
| protein of unknown function | SAMN04488101_102425 | Not Available | - | 1516858 - 1517583 | 28321.0 |
| hypothetical protein | SAMN04488101_102426 | Not Available | - | 1517585 - 1518460 | 33032.1 |
| uncharacterized membrane protein spoiim, required for sporulation | SAMN04488101_102427 | Not Available | - | 1518438 - 1519412 | 36808.3 |
| uncharacterized membrane protein yckc, rdd family | SAMN04488101_102428 | Not Available | + | 1519505 - 1520248 | 27669.1 |
| lysophospholipase l1 | SAMN04488101_102429 | Not Available | - | 1520249 - 1520932 | 24616.3 |
| hypothetical protein | SAMN04488101_102430 | Not Available | - | 1521341 - 1521817 | 17420.4 |
| lipoyl(octanoyl) transferase | SAMN04488101_102431 | Not Available | - | 1521903 - 1522598 | 26510.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.