Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| regulatory protein, fis family | SAMN04488101_102412 | Not Available | + | 1498478 - 1499710 | 46179.2 |
| lipopolysaccharide-assembly | SAMN04488101_102413 | Not Available | + | 1499710 - 1500207 | 18478.1 |
| hypothetical protein | SAMN04488101_102414 | Not Available | + | 1500241 - 1501362 | 42902.8 |
| preprotein translocase subunit secg | SAMN04488101_102415 | Not Available | + | 1501377 - 1501721 | 11568.4 |
| chaperonin groes | SAMN04488101_102416 | Not Available | + | 1501937 - 1502227 | 10142.1 |
| chaperonin groel | SAMN04488101_102417 | Not Available | + | 1502358 - 1503998 | 57785.7 |
| pkd repeat-containing protein | SAMN04488101_102418 | Not Available | + | 1504133 - 1510105 | 212194.0 |
| type ix secretion system membrane protein, porp/sprf family | SAMN04488101_102419 | Not Available | + | 1510129 - 1511130 | 36410.8 |
| putative mg2+ transporter-c (mgtc) family protein | SAMN04488101_102420 | Not Available | + | 1511182 - 1511838 | 24248.1 |
| l-serine dehydratase | SAMN04488101_102421 | Not Available | + | 1511895 - 1513322 | 51040.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.