Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488101_102392 | Not Available | - | 1476172 - 1476471 | 11310.7 |
| hypothetical protein | SAMN04488101_102393 | Not Available | - | 1476590 - 1477216 | 24318.1 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_102394 | Not Available | - | 1477203 - 1477706 | 19656.7 |
| dna-binding transcriptional regulator, lysr family | SAMN04488101_102395 | Not Available | + | 1477805 - 1478701 | 33801.0 |
| conserved hypothetical integral membrane protein | SAMN04488101_102396 | Not Available | + | 1478776 - 1479717 | 33404.0 |
| phosphoribosylamine--glycine ligase | SAMN04488101_102397 | Not Available | + | 1479827 - 1481098 | 45502.6 |
| hypothetical protein | SAMN04488101_102398 | Not Available | - | 1481171 - 1481614 | 16752.5 |
| peroxiredoxin | SAMN04488101_102399 | Not Available | - | 1482145 - 1483290 | 40825.0 |
| arginase family enzyme | SAMN04488101_102400 | Not Available | - | 1483382 - 1484563 | 44590.7 |
| nucleoside-diphosphate-sugar epimerase | SAMN04488101_102401 | Not Available | + | 1484638 - 1485594 | 34609.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.