Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| quinol:cytochrome c oxidoreductase membrane protein | SAMN04488101_102372 | Not Available | - | 1450832 - 1451368 | 20111.3 |
| quinol:cytochrome c oxidoreductase quinone-binding subunit 1 | SAMN04488101_102373 | Not Available | - | 1451371 - 1452843 | 55864.5 |
| quinol:cytochrome c oxidoreductase iron-sulfur protein precursor | SAMN04488101_102374 | Not Available | - | 1452877 - 1455948 | 112349.0 |
| quinol:cytochrome c oxidoreductase pentaheme cytochrome subunit | SAMN04488101_102375 | Not Available | - | 1455995 - 1457290 | 47957.1 |
| homospermidine synthase (spermidine-specific) | SAMN04488101_102376 | Not Available | - | 1457544 - 1458524 | 36866.1 |
| surface antigen | SAMN04488101_102377 | Not Available | + | 1458725 - 1459852 | 42689.8 |
| predicted o-methyltransferase yrrm | SAMN04488101_102378 | Not Available | - | 1459871 - 1460671 | 30405.7 |
| transglutaminase-like superfamily protein | SAMN04488101_102379 | Not Available | + | 1460689 - 1461561 | 33863.3 |
| acetyl esterase/lipase | SAMN04488101_102380 | Not Available | - | 1461556 - 1462443 | 32446.9 |
| peptide chain release factor 2 | SAMN04488101_102381 | Not Available | - | 1462471 - 1463367 | 34242.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.