Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| protein sco1/2 | SAMN04488101_102362 | Not Available | - | 1441382 - 1442089 | 26351.8 |
| caa(3)-type oxidase, subunit iv | SAMN04488101_102363 | Not Available | - | 1442089 - 1442436 | 13442.0 |
| cytochrome c oxidase subunit 3 | SAMN04488101_102364 | Not Available | - | 1442455 - 1443162 | 26843.9 |
| cytochrome c oxidase subunit 3 | SAMN04488101_102365 | Not Available | - | 1443193 - 1443783 | 21808.0 |
| protoheme ix farnesyltransferase | SAMN04488101_102366 | Not Available | - | 1443791 - 1444669 | 32434.7 |
| cytochrome c oxidase assembly protein subunit 15 | SAMN04488101_102367 | Not Available | - | 1444681 - 1445745 | 39829.8 |
| cytochrome c oxidase subunit 1 | SAMN04488101_102368 | Not Available | - | 1445833 - 1447716 | 70294.4 |
| cytochrome c oxidase subunit 2 | SAMN04488101_102369 | Not Available | - | 1447737 - 1448960 | 45880.0 |
| quinol:cytochrome c oxidoreductase quinone-binding subunit 2 | SAMN04488101_102370 | Not Available | - | 1449030 - 1450244 | 46299.6 |
| quinol:cytochrome c oxidoreductase monoheme cytochrome subunit | SAMN04488101_102371 | Not Available | - | 1450255 - 1450860 | 21852.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.