Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| susd family protein | SAMN04488101_102342 | Not Available | - | 1417852 - 1419294 | 54442.2 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_102343 | Not Available | - | 1419387 - 1422902 | 130393.0 |
| fecr family protein | SAMN04488101_102344 | Not Available | - | 1423294 - 1424454 | 43019.1 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_102345 | Not Available | - | 1424506 - 1425093 | 23053.3 |
| cupin-like domain-containing protein | SAMN04488101_102346 | Not Available | + | 1425325 - 1426206 | 33530.6 |
| von willebrand factor type a domain-containing protein | SAMN04488101_102347 | Not Available | + | 1426288 - 1427385 | 41335.6 |
| magnesium chelatase subunit i | SAMN04488101_102348 | Not Available | + | 1427425 - 1428903 | 55849.6 |
| hypothetical protein | SAMN04488101_102349 | Not Available | + | 1428941 - 1430206 | 48081.9 |
| ubia prenyltransferase family protein | SAMN04488101_102350 | Not Available | + | 1430227 - 1431117 | 33545.7 |
| two-component system, ompr family, response regulator mtra | SAMN04488101_102351 | Not Available | - | 1431189 - 1431878 | 26498.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.