Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_102332 | Not Available | - | 1401622 - 1404960 | 124006.0 |
| fecr family protein | SAMN04488101_102333 | Not Available | - | 1405193 - 1406371 | 43777.0 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_102334 | Not Available | - | 1406452 - 1407021 | 22947.7 |
| oxygen-independent coproporphyrinogen-3 oxidase | SAMN04488101_102335 | Not Available | + | 1407254 - 1408300 | 39427.6 |
| short-chain dehydrogenase | SAMN04488101_102336 | Not Available | + | 1408325 - 1409110 | 28739.9 |
| protein of unknown function | SAMN04488101_102337 | Not Available | + | 1409193 - 1410500 | 48153.0 |
| formylglycine-generating enzyme, required for sulfatase activity, contains sumf1/fge domain | SAMN04488101_102338 | Not Available | - | 1410520 - 1411641 | 41320.4 |
| uncharacterized conserved protein, duf1501 family | SAMN04488101_102339 | Not Available | - | 1411682 - 1412947 | 45563.4 |
| uncharacterized conserved protein, duf1800 family | SAMN04488101_102340 | Not Available | - | 1412965 - 1414953 | 74176.3 |
| prolyl oligopeptidase family protein | SAMN04488101_102341 | Not Available | - | 1415207 - 1417831 | 100204.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.