Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| tfp pilus assembly protein pilf | SAMN04488101_102322 | Not Available | - | 1388070 - 1389677 | 61951.3 |
| predicted atpase | SAMN04488101_102323 | Not Available | + | 1389852 - 1390598 | 28154.2 |
| aromatic amino acid:proton symporter, aat family | SAMN04488101_102324 | Not Available | + | 1390687 - 1392129 | 52995.0 |
| thiol-disulfide isomerase or thioredoxin | SAMN04488101_102325 | Not Available | - | 1392166 - 1393554 | 51959.4 |
| thiol-disulfide isomerase or thioredoxin | SAMN04488101_102326 | Not Available | - | 1393574 - 1394965 | 52651.8 |
| thiol-disulfide isomerase or thioredoxin | SAMN04488101_102327 | Not Available | - | 1395006 - 1396397 | 52501.1 |
| thiol-disulfide isomerase or thioredoxin | SAMN04488101_102328 | Not Available | - | 1396406 - 1397806 | 52737.6 |
| pkd-like family protein | SAMN04488101_102329 | Not Available | - | 1397851 - 1399371 | 58633.4 |
| protein of unknown function | SAMN04488101_102330 | Not Available | - | 1399421 - 1400197 | 29207.2 |
| susd family protein | SAMN04488101_102331 | Not Available | - | 1400208 - 1401587 | 52625.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.