Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488101_102302 | Not Available | + | 1358469 - 1359188 | 26728.4 |
| hypothetical protein | SAMN04488101_102303 | Not Available | + | 1359196 - 1359498 | 11043.7 |
| hypothetical protein | SAMN04488101_102304 | Not Available | - | 1359495 - 1360661 | 44985.0 |
| helix-turn-helix domain-containing protein | SAMN04488101_102305 | Not Available | - | 1360934 - 1361176 | 9248.02 |
| protein of unknown function, duf255 | SAMN04488101_102306 | Not Available | - | 1361282 - 1362424 | 43839.1 |
| aspartyl protease | SAMN04488101_102307 | Not Available | - | 1362411 - 1363337 | 33705.8 |
| thioredoxin-like | SAMN04488101_102308 | Not Available | - | 1363360 - 1364517 | 42713.2 |
| thiol-disulfide isomerase or thioredoxin | SAMN04488101_102309 | Not Available | - | 1364568 - 1365959 | 51579.0 |
| pkd-like family protein | SAMN04488101_102310 | Not Available | - | 1365994 - 1367550 | 57662.7 |
| protein of unknown function | SAMN04488101_102311 | Not Available | - | 1367563 - 1368309 | 28009.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.