Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| protein involved in gliding motility gldn | SAMN04488101_102292 | Not Available | - | 1347572 - 1348456 | 33519.2 |
| gliding motility-associated protein gldm | SAMN04488101_102293 | Not Available | - | 1348464 - 1350005 | 54924.6 |
| gliding motility-associated protein gldl | SAMN04488101_102294 | Not Available | - | 1350055 - 1350858 | 28610.1 |
| gliding motility-associated lipoprotein gldk | SAMN04488101_102295 | Not Available | - | 1350904 - 1352319 | 52715.2 |
| uroporphyrinogen-iii synthase | SAMN04488101_102296 | Not Available | - | 1352440 - 1353210 | 29377.2 |
| protein of unknown function | SAMN04488101_102297 | Not Available | - | 1353230 - 1354261 | 39825.6 |
| hypothetical protein | SAMN04488101_102298 | Not Available | + | 1354639 - 1355310 | 25165.2 |
| hypothetical protein | SAMN04488101_102299 | Not Available | + | 1355312 - 1355950 | 23519.3 |
| purple acid phosphatase, n-terminal domain | SAMN04488101_102300 | Not Available | - | 1356048 - 1357259 | 45485.1 |
| glucokinase | SAMN04488101_102301 | Not Available | - | 1357401 - 1358270 | 31658.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.