Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| f-type h+-transporting atpase subunit alpha | SAMN04488101_102282 | Not Available | - | 1335681 - 1337255 | 56764.6 |
| atp synthase f1 subcomplex delta subunit | SAMN04488101_102283 | Not Available | - | 1337330 - 1337878 | 19627.9 |
| atp synthase f0 subcomplex b subunit | SAMN04488101_102284 | Not Available | - | 1337913 - 1338407 | 18636.8 |
| atp synthase f0 subcomplex c subunit | SAMN04488101_102285 | Not Available | - | 1338485 - 1338697 | 6626.33 |
| atp synthase f0 subcomplex a subunit | SAMN04488101_102286 | Not Available | - | 1338736 - 1339890 | 43361.5 |
| hypothetical protein | SAMN04488101_102287 | Not Available | - | 1339908 - 1340294 | 14439.4 |
| putative f0f1-atpase subunit ca2+/mg2+ transporter | SAMN04488101_102288 | Not Available | - | 1340342 - 1340566 | 8437.33 |
| tetratricopeptide repeat-containing protein | SAMN04488101_102289 | Not Available | + | 1340668 - 1343457 | 105416.0 |
| penicillin-binding protein 1a | SAMN04488101_102290 | Not Available | + | 1343459 - 1345678 | 82702.6 |
| excinuclease abc subunit c | SAMN04488101_102291 | Not Available | + | 1345703 - 1347508 | 69432.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.