Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase involved in cell wall bisynthesis | SAMN04488101_102272 | Not Available | - | 1325931 - 1327133 | 46336.7 |
| rnase hii | SAMN04488101_102273 | Not Available | - | 1327153 - 1327764 | 22756.4 |
| peptide/nickel transport system permease protein | SAMN04488101_102274 | Not Available | - | 1327792 - 1328883 | 40283.7 |
| glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-n-acetylglucosamine synthase | SAMN04488101_102275 | Not Available | - | 1328883 - 1330019 | 42721.2 |
| hypothetical protein | SAMN04488101_102276 | Not Available | - | 1329997 - 1330998 | 38746.9 |
| holliday junction endonuclease ruvc | SAMN04488101_102277 | Not Available | + | 1331018 - 1331581 | 20713.4 |
| protein of unknown function | SAMN04488101_102278 | Not Available | - | 1331655 - 1332518 | 32690.5 |
| hypothetical protein | SAMN04488101_102279 | Not Available | - | 1332662 - 1332877 | 7821.95 |
| conserved hypothetical protein | SAMN04488101_102280 | Not Available | + | 1332997 - 1334634 | 60589.6 |
| atp synthase f1 subcomplex gamma subunit | SAMN04488101_102281 | Not Available | - | 1334707 - 1335591 | 32235.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.