Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| outer membrane protein tolc | SAMN04488101_102262 | Not Available | - | 1314632 - 1315981 | 51769.5 |
| seryl-trna synthetase | SAMN04488101_102263 | Not Available | - | 1316196 - 1317467 | 47293.4 |
| 16s rrna (cytidine1402-2'-o)-methyltransferase | SAMN04488101_102264 | Not Available | + | 1317521 - 1318264 | 27935.6 |
| short c-terminal domain-containing protein | SAMN04488101_102265 | Not Available | + | 1318306 - 1318950 | 24444.4 |
| apolipoprotein n-acyltransferase | SAMN04488101_102266 | Not Available | + | 1318961 - 1320586 | 60571.6 |
| nh(3)-dependent nad(+) synthetase | SAMN04488101_102267 | Not Available | - | 1320616 - 1322256 | 60723.0 |
| outer membrane protein beta-barrel domain-containing protein | SAMN04488101_102268 | Not Available | - | 1322305 - 1322967 | 24018.6 |
| gliding motility-associated lipoprotein gldb | SAMN04488101_102269 | Not Available | + | 1323027 - 1324055 | 40004.9 |
| 2-phosphosulfolactate phosphatase | SAMN04488101_102270 | Not Available | - | 1324036 - 1324767 | 26953.5 |
| aminomethyltransferase | SAMN04488101_102271 | Not Available | - | 1324810 - 1325889 | 39643.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.