Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| antagonist of kipi | SAMN04488101_102252 | Not Available | - | 1301253 - 1302209 | 34734.7 |
| inhibitor of kina | SAMN04488101_102253 | Not Available | - | 1302199 - 1302906 | 25510.4 |
| outer membrane protein ompa | SAMN04488101_102254 | Not Available | - | 1303009 - 1304304 | 45165.1 |
| isoleucyl-trna synthetase | SAMN04488101_102255 | Not Available | + | 1304584 - 1307976 | 129233.0 |
| transcriptional regulator, trar/dksa family | SAMN04488101_102256 | Not Available | + | 1307984 - 1308364 | 14439.2 |
| signal peptidase ii | SAMN04488101_102257 | Not Available | + | 1308366 - 1308968 | 22763.9 |
| hypothetical protein | SAMN04488101_102258 | Not Available | + | 1309052 - 1309753 | 26004.7 |
| hypothetical protein | SAMN04488101_102259 | Not Available | + | 1309889 - 1310209 | 11644.6 |
| hydrophobic/amphiphilic exporter-1, hae1 family | SAMN04488101_102260 | Not Available | - | 1310317 - 1313496 | 114170.0 |
| membrane fusion protein, multidrug efflux system | SAMN04488101_102261 | Not Available | - | 1313512 - 1314627 | 39612.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.