Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488101_102242 | Not Available | + | 1290134 - 1290844 | 27382.1 |
| hypothetical protein | SAMN04488101_102243 | Not Available | + | 1290856 - 1291842 | 36902.8 |
| 4-hydroxybenzoate polyprenyltransferase | SAMN04488101_102244 | Not Available | + | 1291850 - 1292764 | 32721.6 |
| 3-dehydroquinate synthase | SAMN04488101_102245 | Not Available | + | 1292779 - 1293957 | 43414.7 |
| hypothetical protein | SAMN04488101_102246 | Not Available | + | 1293959 - 1295164 | 45520.3 |
| predicted pyrophosphatase or phosphodiesterase, alkp superfamily | SAMN04488101_102247 | Not Available | + | 1295181 - 1296533 | 51044.2 |
| phospholipase c | SAMN04488101_102248 | Not Available | + | 1296633 - 1298984 | 88205.4 |
| hypothetical protein | SAMN04488101_102249 | Not Available | - | 1298989 - 1299228 | 8980.41 |
| mn2+ and fe2+ transporters of the nramp family | SAMN04488101_102250 | Not Available | - | 1299297 - 1300475 | 41349.4 |
| upf0271 protein | SAMN04488101_102251 | Not Available | - | 1300480 - 1301247 | 27346.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.