Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_102232 | Not Available | + | 1272612 - 1273160 | 21053.3 |
| fecr family protein | SAMN04488101_102233 | Not Available | + | 1273230 - 1274399 | 43630.1 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_102234 | Not Available | + | 1274638 - 1277844 | 118552.0 |
| susd family protein | SAMN04488101_102235 | Not Available | + | 1277859 - 1279313 | 53917.0 |
| hypothetical protein | SAMN04488101_102236 | Not Available | + | 1279413 - 1279880 | 17746.6 |
| zinc protease | SAMN04488101_102237 | Not Available | + | 1279889 - 1282708 | 105926.0 |
| hypothetical protein | SAMN04488101_102238 | Not Available | + | 1282714 - 1284474 | 64331.7 |
| calcineurin-like phosphoesterase | SAMN04488101_102239 | Not Available | + | 1284551 - 1286116 | 58652.3 |
| superfamily ii dna or rna helicase, snf2 family | SAMN04488101_102240 | Not Available | - | 1286250 - 1289633 | 129103.0 |
| transmembrane family 220, helix | SAMN04488101_102241 | Not Available | + | 1289752 - 1290120 | 14011.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.