Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488101_102222 | Not Available | - | 1260799 - 1261620 | 30041.6 |
| rhamnogalacturonyl hydrolase yesr | SAMN04488101_102223 | Not Available | + | 1261890 - 1263035 | 43762.5 |
| glucose / sorbosone dehydrogenase | SAMN04488101_102224 | Not Available | + | 1263115 - 1264395 | 47052.2 |
| cytochrome c, mono-and diheme variants | SAMN04488101_102225 | Not Available | + | 1264406 - 1264855 | 15850.5 |
| glycosyl hydrolase family 88 | SAMN04488101_102226 | Not Available | + | 1264901 - 1265284 | 14356.2 |
| hypothetical protein | SAMN04488101_102227 | Not Available | - | 1265390 - 1265647 | 9908.19 |
| hypothetical protein | SAMN04488101_102228 | Not Available | - | 1265659 - 1266750 | 40755.5 |
| fasciclin domain-containing protein | SAMN04488101_102229 | Not Available | - | 1266754 - 1267545 | 29921.1 |
| starch-binding associating with outer membrane | SAMN04488101_102230 | Not Available | - | 1267496 - 1269070 | 58684.4 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_102231 | Not Available | - | 1269083 - 1272208 | 115253.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.