Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| sigma-70 region 2 | SAMN04488101_102212 | Not Available | + | 1243079 - 1243651 | 22128.9 |
| fecr family protein | SAMN04488101_102213 | Not Available | + | 1243722 - 1244858 | 42215.6 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_102214 | Not Available | + | 1244976 - 1248494 | 129158.0 |
| starch-binding associating with outer membrane | SAMN04488101_102215 | Not Available | + | 1248521 - 1249963 | 53970.2 |
| fad dependent oxidoreductase | SAMN04488101_102216 | Not Available | + | 1249983 - 1251575 | 59068.2 |
| hypothetical protein | SAMN04488101_102217 | Not Available | + | 1251579 - 1253387 | 64725.1 |
| hypothetical protein | SAMN04488101_102218 | Not Available | + | 1253410 - 1255296 | 70647.6 |
| alpha-l-rhamnosidase | SAMN04488101_102219 | Not Available | + | 1255329 - 1257617 | 85748.2 |
| organic hydroperoxide reductase osmc/ohra | SAMN04488101_102220 | Not Available | - | 1257623 - 1258099 | 17741.9 |
| phospholipase c | SAMN04488101_102221 | Not Available | - | 1258159 - 1260693 | 94300.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.