Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| outer membrane receptor for ferrienterochelin and colicins | SAMN04488101_102202 | Not Available | - | 1234224 - 1236503 | 84812.5 |
| iron (metal) dependent repressor, dtxr family | SAMN04488101_102203 | Not Available | + | 1236605 - 1237267 | 25207.4 |
| hypothetical protein | SAMN04488101_102204 | Not Available | + | 1237311 - 1238594 | 50065.9 |
| hypothetical protein | SAMN04488101_102205 | Not Available | + | 1238604 - 1238909 | 11730.4 |
| 23s rrna m(6)a-1618 methyltransferase | SAMN04488101_102206 | Not Available | - | 1238927 - 1239877 | 35250.3 |
| Trna-val | Not Available | Not Available | + | 1240038 - 1240112 | Not Available |
| Trna-val | Not Available | Not Available | + | 1240150 - 1240227 | Not Available |
| dna replication and repair protein reco | SAMN04488101_102209 | Not Available | - | 1240353 - 1241078 | 28101.1 |
| undecaprenol kinase | SAMN04488101_102210 | Not Available | - | 1241068 - 1241427 | 12959.3 |
| glucose/arabinose dehydrogenase, beta-propeller fold | SAMN04488101_102211 | Not Available | - | 1241485 - 1242894 | 52606.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.