Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized lipoprotein nlpe involved in copper resistance | SAMN04488101_102192 | Not Available | + | 1223548 - 1224021 | 17299.4 |
| 4a-hydroxytetrahydrobiopterin dehydratase | SAMN04488101_102193 | Not Available | + | 1224033 - 1224296 | 10375.5 |
| gdsl-like lipase/acylhydrolase | SAMN04488101_102194 | Not Available | - | 1224368 - 1225648 | 45009.9 |
| long-chain fatty acid transport protein | SAMN04488101_102195 | Not Available | - | 1225744 - 1226949 | 43014.3 |
| nitroreductase | SAMN04488101_102196 | Not Available | + | 1227213 - 1227845 | 23419.0 |
| hypothetical protein | SAMN04488101_102197 | Not Available | + | 1227999 - 1230722 | 100670.0 |
| phage shock protein c (pspc) family protein | SAMN04488101_102198 | Not Available | - | 1230774 - 1232312 | 58092.1 |
| padr family transcriptional regulator, regulatory protein padr | SAMN04488101_102199 | Not Available | - | 1232309 - 1232677 | 13830.6 |
| hypothetical protein | SAMN04488101_102200 | Not Available | + | 1232882 - 1233040 | 6054.83 |
| hypothetical protein | SAMN04488101_102201 | Not Available | - | 1233045 - 1234187 | 41614.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.