Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family | SAMN04488101_102182 | Not Available | - | 1212119 - 1213231 | 42171.6 |
| membrane associated serine protease, rhomboid family | SAMN04488101_102183 | Not Available | - | 1213231 - 1214094 | 31890.3 |
| rhomboid-like protein | SAMN04488101_102184 | Not Available | - | 1214087 - 1214827 | 27668.5 |
| dna mismatch repair protein mutl | SAMN04488101_102185 | Not Available | - | 1214831 - 1216702 | 69416.8 |
| cubico group peptidase, beta-lactamase class c family | SAMN04488101_102186 | Not Available | + | 1216835 - 1218655 | 67742.1 |
| phage repressor protein c, contains cro/c1-type hth and peptisase s24 domains | SAMN04488101_102187 | Not Available | - | 1218667 - 1219350 | 26304.3 |
| hypothetical protein | SAMN04488101_102188 | Not Available | + | 1219470 - 1220612 | 45301.5 |
| hepn domain-containing protein | SAMN04488101_102189 | Not Available | + | 1220649 - 1221554 | 34614.7 |
| isopenicillin n synthase | SAMN04488101_102190 | Not Available | - | 1221703 - 1222665 | 36120.7 |
| peptide-methionine (s)-s-oxide reductase | SAMN04488101_102191 | Not Available | + | 1222917 - 1223516 | 22640.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.