Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| lipoic acid synthetase | SAMN04488101_102162 | Not Available | + | 1188893 - 1189771 | 32964.7 |
| yjef c-terminal region, hydroxyethylthiazole kinase-related | SAMN04488101_102163 | Not Available | - | 1189816 - 1190748 | 33371.0 |
| excinuclease abc subunit a | SAMN04488101_102164 | Not Available | - | 1190759 - 1193602 | 105884.0 |
| ring-1,2-phenylacetyl-coa epoxidase subunit paae | SAMN04488101_102165 | Not Available | - | 1193738 - 1194781 | 39417.4 |
| transglycosylase slt domain-containing protein | SAMN04488101_102166 | Not Available | - | 1194869 - 1195660 | 29668.9 |
| hypothetical protein | SAMN04488101_102167 | Not Available | + | 1195856 - 1196035 | 6570.98 |
| 23s rrna pseudouridine2605 synthase | SAMN04488101_102168 | Not Available | + | 1196378 - 1197907 | 57736.5 |
| 6-phosphogluconolactonase | SAMN04488101_102169 | Not Available | + | 1197919 - 1199037 | 40845.4 |
| n-acetyl-alpha-d-glucosaminyl l-malate synthase bsha | SAMN04488101_102170 | Not Available | - | 1199041 - 1200186 | 42712.3 |
| hypothetical protein | SAMN04488101_102171 | Not Available | - | 1200331 - 1200813 | 18874.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.