Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_102152 | Not Available | + | 1177622 - 1178197 | 22469.0 |
| fecr family protein | SAMN04488101_102153 | Not Available | + | 1178280 - 1179455 | 43858.8 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_102154 | Not Available | + | 1179529 - 1182846 | 122713.0 |
| susd family protein | SAMN04488101_102155 | Not Available | + | 1182897 - 1184126 | 45377.2 |
| predicted protein | SAMN04488101_102156 | Not Available | + | 1184145 - 1185071 | 33871.6 |
| putative binding domain-containing protein, n-terminal | SAMN04488101_102157 | Not Available | + | 1185081 - 1186841 | 61036.7 |
| 6,7-dimethyl-8-ribityllumazine synthase | SAMN04488101_102158 | Not Available | + | 1186939 - 1187430 | 17043.4 |
| bacillithiol system protein ytxj | SAMN04488101_102159 | Not Available | + | 1187652 - 1187984 | 12670.0 |
| uncharacterized osmc-related protein | SAMN04488101_102160 | Not Available | - | 1187974 - 1188378 | 14613.3 |
| heat shock protein hslj | SAMN04488101_102161 | Not Available | + | 1188457 - 1188876 | 15433.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.