Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| l-asparaginase | SAMN04488101_102142 | Not Available | - | 1169605 - 1170621 | 37687.5 |
| tatd dnase family protein | SAMN04488101_102143 | Not Available | - | 1170624 - 1171391 | 29087.0 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | SAMN04488101_102144 | Not Available | - | 1171500 - 1172504 | 35603.0 |
| phosphoesterase recj domain-containing protein | SAMN04488101_102145 | Not Available | - | 1172563 - 1173573 | 37765.1 |
| nucleoside diphosphate kinase | SAMN04488101_102146 | Not Available | + | 1173714 - 1174133 | 14992.7 |
| fkbp-type peptidyl-prolyl cis-trans isomerase fklb | SAMN04488101_102147 | Not Available | + | 1174300 - 1175031 | 26470.3 |
| hypothetical protein | SAMN04488101_102148 | Not Available | + | 1175088 - 1175261 | 6270.18 |
| protein of unknown function | SAMN04488101_102149 | Not Available | - | 1175263 - 1175553 | 10892.6 |
| dna replication and repair protein recf | SAMN04488101_102150 | Not Available | - | 1175546 - 1176649 | 42692.6 |
| tpr repeat-containing protein | SAMN04488101_102151 | Not Available | + | 1176809 - 1177480 | 24693.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.