Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter, opa family, glycerol-3-phosphate transporter | SAMN04488101_102132 | Not Available | - | 1154021 - 1155358 | 49597.1 |
| glycerophosphoryl diester phosphodiesterase | SAMN04488101_102133 | Not Available | - | 1155447 - 1156349 | 33799.0 |
| calcineurin-like phosphoesterase | SAMN04488101_102134 | Not Available | - | 1156437 - 1157822 | 52384.1 |
| hypothetical protein | SAMN04488101_102135 | Not Available | - | 1158007 - 1159557 | 55402.4 |
| starch-binding associating with outer membrane | SAMN04488101_102136 | Not Available | - | 1159582 - 1161147 | 58701.9 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_102137 | Not Available | - | 1161159 - 1164425 | 118860.0 |
| glycerol-3-phosphate dehydrogenase | SAMN04488101_102138 | Not Available | - | 1164549 - 1166159 | 58245.5 |
| transcriptional regulator, deor family | SAMN04488101_102139 | Not Available | + | 1166363 - 1167127 | 27476.3 |
| octaprenyl-diphosphate synthase | SAMN04488101_102140 | Not Available | - | 1167143 - 1168114 | 36418.1 |
| glyoxylase, beta-lactamase superfamily ii | SAMN04488101_102141 | Not Available | - | 1168119 - 1169534 | 51411.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.