Parabacteroides sp. 20_3

Gram-negativeAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Tannerellaceae

Genus

Parabacteroides

Description

Parabacteroides sp. 20_3 is a Gram-negative, rod-shaped bacterium that thrives in anaerobic conditions, categorizing it as an obligate anaerobe. This microbe is primarily found in the human gastrointestinal tract, where it plays a significant role in gut health and metabolism. Parabacteroides sp. 20_3 is classified as a chemoheterotroph, utilizing organic compounds for energy and growth, primarily deriving nutrients from complex polysaccharides, proteins, and other organic materials present in the diet. Being an obligate anaerobe means that Parabacteroides sp. 20_3 cannot survive in the presence of oxygen, which necessitates an environment that is oxygen-free, such as the intestines. This adaptation is crucial for its survival and function within the gut microbiome, where it contributes to the fermentation of undigested carbohydrates and the production of short-chain fatty acids, which are beneficial for host health. The rod shape of Parabacteroides sp. 20_3 aids in its mobility and colonization of gut niches, enabling it to penetrate biofilms and interact dynamically with other microbial species. As a Gram-negative organism, it possesses an outer membrane that helps resist certain antibiotics and contributes to its ecological niche within the gut. Furthermore, this microbe is being researched for its potential health benefits, including its role in modulating immune responses and its contributions to metabolic pathways that affect host health, including possible implications in obesity and metabolic syndrome. Its ability to interact with other gut bacteria also underscores its importance in maintaining the delicate balance of the human microbiome.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyTannerellaceae
GenusParabacteroides
SpeciesParabacteroides sp. 20_3
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Parabacteroides sp. 20_3

Accession NumberQSQY00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4129 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinDXC95_21730Not Available-5091468 - 50917169466.31
single-stranded dna-binding proteinDXC95_21735Not Available+5092327 - 509272514892.7
udp-n-acetyl-d-mannosamine dehydrogenaseDXC95_21740Not Available+5092838 - 509312810836.1
prenyltransferaseDXC95_21750Not Available-5093848 - 509461828629.1

Displaying genes 4201 – 4204 of 4204 in total

Pathways

123 pathways

Metabolites

269 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da

Displaying 1–10 of 269 metabolites