Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter duraquae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter duraquae str. DSM 19034
Accession NumberSNWM00000000.1
Gene Summary
Adenine Count
1553518 bp
Thymine Count
1550797 bp
Guanine Count
1084215 bp
Cytosine Count
1099733 bp
Genome Length
5288263 bp
Protein-coding Genes
4647 genes
Non-Coding Genes
60 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| putative membrane protein ypha (doxx/surf4 family) | CLV32_4312 | Not Available | + | 4807437 - 4808588 | 42658.5 |
| peptide/nickel transport system permease protein | CLV32_4313 | Not Available | + | 4808590 - 4809645 | 38940.1 |
| shikimate kinase | CLV32_4314 | Not Available | + | 4809649 - 4810164 | 19026.2 |
| peptidase m28-like protein | CLV32_4315 | Not Available | - | 4810156 - 4811862 | 62320.8 |
| trna pseudouridine38-40 synthase | CLV32_4316 | Not Available | - | 4811901 - 4812710 | 31087.5 |
| hexosaminidase | CLV32_4317 | Not Available | - | 4812710 - 4814674 | 74128.2 |
| d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidase (penicillin-binding protein 4) | CLV32_4318 | Not Available | - | 4814731 - 4816149 | 51438.4 |
| aspartate-semialdehyde dehydrogenase | CLV32_4319 | Not Available | - | 4816217 - 4817209 | 36597.5 |
| secreted protein | CLV32_4320 | Not Available | - | 4817285 - 4818160 | 32279.9 |
| hydroxypyruvate isomerase | CLV32_4321 | Not Available | - | 4818168 - 4819058 | 33026.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.