Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter duraquae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter duraquae str. DSM 19034
Accession NumberSNWM00000000.1
Gene Summary
Adenine Count
1553518 bp
Thymine Count
1550797 bp
Guanine Count
1084215 bp
Cytosine Count
1099733 bp
Genome Length
5288263 bp
Protein-coding Genes
4647 genes
Non-Coding Genes
60 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| type ix secretion system porp/sprf family membrane protein | CLV32_4242 | Not Available | + | 4720644 - 4721639 | 35742.7 |
| wd40 repeat protein | CLV32_4243 | Not Available | + | 4721651 - 4723663 | 75706.5 |
| two-component system response regulator vicr | CLV32_4244 | Not Available | + | 4723937 - 4724311 | 14242.7 |
| putative secreted protein (por secretion system target) | CLV32_4245 | Not Available | + | 4724480 - 4727605 | 114529.0 |
| hypothetical protein | CLV32_4246 | Not Available | + | 4727610 - 4727810 | 7213.79 |
| n-acetylglucosamine kinase-like badf-type atpase | CLV32_4247 | Not Available | - | 4727821 - 4728675 | 31820.8 |
| outer membrane protein tolc | CLV32_4248 | Not Available | - | 4728694 - 4730055 | 50244.2 |
| multidrug efflux pump | CLV32_4249 | Not Available | - | 4730042 - 4733155 | 114071.0 |
| membrane fusion protein (multidrug efflux system) | CLV32_4250 | Not Available | - | 4733168 - 4734262 | 38782.1 |
| putative metalloprotease with pdz domain | CLV32_4251 | Not Available | + | 4734404 - 4736197 | 65801.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.