Pedobacter duraquae str. DSM 19034

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter duraquae strain DSM 19034 is a Gram-negative, non-spore-forming rod-shaped bacterium that thrives optimally at a temperature of 25.0°C. This microbe is characterized by its unique morphology and growth conditions, which suggest an adaptation to specific environmental niches. As a member of the Pedobacter genus, P. duraquae may play a role in various ecological processes, although detailed ecological interactions remain to be elucidated. The Gram-negative cell wall structure of P. duraquae is indicative of its potential resilience to certain environmental stresses, which could be advantageous in its natural habitats. The absence of sporulation suggests that this organism relies on other survival mechanisms, potentially including metabolic versatility or rapid reproductive strategies under favorable conditions. Understanding the physiological traits of P. duraquae may contribute to a broader comprehension of microbial diversity in its habitat. Its optimal growth temperature aligns with mesophilic organisms, which are commonly found in various environments, including soil and aquatic systems. This suggests that P. duraquae may occupy ecological niches where moderate temperatures prevail, possibly impacting nutrient cycling or organic matter decomposition. Overall, the traits of Pedobacter duraquae strain DSM 19034 highlight its potential ecological significance, particularly in environments where temperature stability and nutrient availability are crucial for microbial communities. Further research could uncover its functional roles within these ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter duraquae
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter duraquae str. DSM 19034

Accession NumberSNWM00000000.1

Gene Summary

Adenine Count

1553518 bp

Thymine Count

1550797 bp

Guanine Count

1084215 bp

Cytosine Count

1099733 bp

Genome Length

5288263 bp

Protein-coding Genes

4647 genes

Non-Coding Genes

60 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
4-diphosphocytidyl-2-c-methyl-d-erythritol kinaseCLV32_1032Not Available-1158981 - 115978429459.4
thymidylate synthaseCLV32_1033Not Available+1159920 - 116071430196.1
dihydrofolate reductaseCLV32_1034Not Available+1160711 - 116119618114.7
secd/secf fusion proteinCLV32_1035Not Available+1161308 - 1164241106337.0
hydroxymethylglutaryl-coa lyaseCLV32_1036Not Available+1164315 - 116517831441.4
putative gnat family n-acyltransferaseCLV32_1037Not Available-1165179 - 116561016206.5
fructose-bisphosphate aldolaseCLV32_1038Not Available-1165664 - 116674339771.1
acetyl-coa carboxylase carboxyl transferase subunit betaCLV32_1039Not Available+1166896 - 116774131148.9
putative alpha-1,2-mannosidaseCLV32_1040Not Available-1168176 - 117047086272.9
hypothetical proteinCLV32_1041Not Available-1170525 - 11707468089.16

Displaying genes 1061 – 1070 of 4707 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites