Pedobacter duraquae str. DSM 19034

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter duraquae strain DSM 19034 is a Gram-negative, non-spore-forming rod-shaped bacterium that thrives optimally at a temperature of 25.0°C. This microbe is characterized by its unique morphology and growth conditions, which suggest an adaptation to specific environmental niches. As a member of the Pedobacter genus, P. duraquae may play a role in various ecological processes, although detailed ecological interactions remain to be elucidated. The Gram-negative cell wall structure of P. duraquae is indicative of its potential resilience to certain environmental stresses, which could be advantageous in its natural habitats. The absence of sporulation suggests that this organism relies on other survival mechanisms, potentially including metabolic versatility or rapid reproductive strategies under favorable conditions. Understanding the physiological traits of P. duraquae may contribute to a broader comprehension of microbial diversity in its habitat. Its optimal growth temperature aligns with mesophilic organisms, which are commonly found in various environments, including soil and aquatic systems. This suggests that P. duraquae may occupy ecological niches where moderate temperatures prevail, possibly impacting nutrient cycling or organic matter decomposition. Overall, the traits of Pedobacter duraquae strain DSM 19034 highlight its potential ecological significance, particularly in environments where temperature stability and nutrient availability are crucial for microbial communities. Further research could uncover its functional roles within these ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter duraquae
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter duraquae str. DSM 19034

Accession NumberSNWM00000000.1

Gene Summary

Adenine Count

1553518 bp

Thymine Count

1550797 bp

Guanine Count

1084215 bp

Cytosine Count

1099733 bp

Genome Length

5288263 bp

Protein-coding Genes

4647 genes

Non-Coding Genes

60 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinCLV32_1012Not Available-1134759 - 113519016730.0
3-oxoacyl-[acyl-carrier-protein] synthase iiCLV32_1013Not Available-1135244 - 113648843798.5
putative metalloprotease with pdz domainCLV32_1014Not Available-1136549 - 113842969108.1
elaa proteinCLV32_1015Not Available-1138536 - 113898216689.1
fhs family l-fucose permease-like mfs transporterCLV32_1016Not Available-1138985 - 114043952442.9
acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase-like proteinCLV32_1017Not Available-1140584 - 114195450505.2
putative secreted protein (por secretion system target)CLV32_1018Not Available+1142040 - 114299635303.9
dna helicase-2/atp-dependent dna helicase pcraCLV32_1019Not Available+1143064 - 114537087575.2
uncharacterized protein duf4290CLV32_1020Not Available+1145382 - 114605626066.9
udp-n-acetylglucosamine 1-carboxyvinyltransferaseCLV32_1021Not Available+1146080 - 114740548108.9

Displaying genes 1041 – 1050 of 4707 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites