Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| prolyl oligopeptidase family protein | SAMN04489864_102398 | Not Available | + | 1072403 - 1073188 | 29454.6 |
| rhamnogalacturonyl hydrolase yesr | SAMN04489864_102399 | Not Available | + | 1073253 - 1074383 | 42530.4 |
| sialate o-acetylesterase | SAMN04489864_102400 | Not Available | + | 1074396 - 1075907 | 56998.0 |
| polysaccharide lyase | SAMN04489864_102401 | Not Available | + | 1076003 - 1077076 | 38747.5 |
| response regulator receiver domain-containing protein | SAMN04489864_102402 | Not Available | + | 1077240 - 1077623 | 14165.4 |
| mtn3 and saliva related transmembrane protein | SAMN04489864_102403 | Not Available | - | 1077628 - 1077897 | 10012.8 |
| hypothetical protein | SAMN04489864_102404 | Not Available | - | 1077881 - 1078507 | 22694.2 |
| rieske | SAMN04489864_102405 | Not Available | - | 1078514 - 1080043 | 55917.5 |
| hypothetical protein | SAMN04489864_102406 | Not Available | + | 1080242 - 1080568 | 11785.6 |
| hypothetical protein | SAMN04489864_102407 | Not Available | + | 1080658 - 1080894 | 9195.95 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.