Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| l-fucose dehydrogenase | SAMN04489864_102388 | Not Available | + | 1058284 - 1059072 | 28306.1 |
| alpha-l-fucosidase 2 | SAMN04489864_102389 | Not Available | + | 1059146 - 1061683 | 95163.5 |
| hypothetical protein | SAMN04489864_102390 | Not Available | + | 1061708 - 1061836 | 4976.25 |
| alpha-d-xyloside xylohydrolase | SAMN04489864_102391 | Not Available | + | 1061843 - 1063990 | 80761.8 |
| alginate lyase | SAMN04489864_102392 | Not Available | + | 1063993 - 1065156 | 44536.6 |
| glycosyl hydrolase family 88 | SAMN04489864_102393 | Not Available | + | 1065204 - 1066418 | 45581.1 |
| poly(beta-d-mannuronate) lyase | SAMN04489864_102394 | Not Available | + | 1066450 - 1067844 | 50526.1 |
| poly(beta-d-mannuronate) lyase | SAMN04489864_102395 | Not Available | + | 1067848 - 1069326 | 52643.9 |
| alpha-l-fucosidase | SAMN04489864_102396 | Not Available | + | 1069354 - 1070787 | 53133.0 |
| right handed beta helix region | SAMN04489864_102397 | Not Available | + | 1070817 - 1072346 | 56887.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.