Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| autoinducer 2 (ai-2) kinase | SAMN04489864_102368 | Not Available | - | 1027457 - 1028941 | 55113.7 |
| d-3-phosphoglycerate dehydrogenase | SAMN04489864_102369 | Not Available | - | 1028911 - 1029873 | 35756.9 |
| transcriptional regulator, deor family | SAMN04489864_102370 | Not Available | + | 1030098 - 1030910 | 29862.2 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04489864_102371 | Not Available | + | 1031565 - 1034615 | 112446.0 |
| starch-binding associating with outer membrane | SAMN04489864_102372 | Not Available | + | 1034621 - 1036315 | 63423.5 |
| metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family | SAMN04489864_102373 | Not Available | - | 1036380 - 1037315 | 34654.4 |
| fad dependent oxidoreductase | SAMN04489864_102374 | Not Available | - | 1037326 - 1038723 | 50375.4 |
| mfs transporter, acs family, hexuronate transporter | SAMN04489864_102375 | Not Available | - | 1038823 - 1040067 | 45623.8 |
| hypothetical protein | SAMN04489864_102376 | Not Available | + | 1040734 - 1041978 | 45427.9 |
| hypothetical protein | SAMN04489864_102377 | Not Available | + | 1041988 - 1042881 | 32950.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.