Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| l-lactate dehydrogenase complex protein lldf | SAMN04489864_102358 | Not Available | - | 1018365 - 1019744 | 51631.2 |
| l-lactate dehydrogenase complex protein llde | SAMN04489864_102359 | Not Available | - | 1019741 - 1020481 | 27303.2 |
| arac-type dna-binding protein | SAMN04489864_102360 | Not Available | - | 1020547 - 1021425 | 33646.7 |
| l-fucose dehydrogenase | SAMN04489864_102361 | Not Available | + | 1021783 - 1021923 | 5003.95 |
| unsaturated rhamnogalacturonyl hydrolase | SAMN04489864_102362 | Not Available | + | 1022098 - 1022883 | 29014.6 |
| Trna-pro | Not Available | Not Available | + | 1022978 - 1023054 | Not Available |
| calcineurin-like phosphoesterase | SAMN04489864_102364 | Not Available | - | 1023323 - 1024441 | 42606.6 |
| exonuclease iii | SAMN04489864_102365 | Not Available | - | 1024451 - 1025344 | 33808.7 |
| alpha-ribazole phosphatase | SAMN04489864_102366 | Not Available | - | 1025411 - 1026010 | 22374.7 |
| sugar (pentulose or hexulose) kinase | SAMN04489864_102367 | Not Available | - | 1026003 - 1027457 | 53286.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.