Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04489864_102348 | Not Available | + | 1010945 - 1011400 | 17060.0 |
| dna-binding transcriptional regulator, marr family | SAMN04489864_102349 | Not Available | + | 1011484 - 1012143 | 25026.9 |
| phytoene desaturase | SAMN04489864_102350 | Not Available | + | 1012143 - 1013648 | 56748.0 |
| phytoene/squalene synthetase | SAMN04489864_102351 | Not Available | + | 1013632 - 1014468 | 32371.1 |
| hypothetical protein | SAMN04489864_102352 | Not Available | + | 1014465 - 1014911 | 17202.0 |
| beta-carotene 3-hydroxylase | SAMN04489864_102353 | Not Available | + | 1014925 - 1015383 | 18565.0 |
| lycopene cyclase domain-containing protein | SAMN04489864_102354 | Not Available | + | 1015380 - 1016060 | 26179.0 |
| isopentenyl-diphosphate delta-isomerase | SAMN04489864_102355 | Not Available | + | 1016064 - 1016588 | 20359.4 |
| protein of unknown function | SAMN04489864_102356 | Not Available | + | 1016653 - 1017627 | 35401.5 |
| l-lactate dehydrogenase complex protein lldg | SAMN04489864_102357 | Not Available | - | 1017788 - 1018375 | 21441.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.