Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| putative phosphoesterase, sbcd/mre11-related/metallophosphoesterase, dna ligase-associated | SAMN04489864_102298 | Not Available | - | 955259 - 955897 | 24349.4 |
| atp-dependent helicase lhr and lhr-like helicase | SAMN04489864_102299 | Not Available | - | 955901 - 958360 | 92923.8 |
| dna ligase-1 | SAMN04489864_102300 | Not Available | - | 958370 - 959980 | 61185.5 |
| putative mrna 3-end processing factor | SAMN04489864_102301 | Not Available | - | 959977 - 960999 | 38312.8 |
| satd family (satd) | SAMN04489864_102302 | Not Available | + | 961127 - 961738 | 22790.6 |
| protein of unknown function | SAMN04489864_102303 | Not Available | + | 961741 - 962448 | 26861.0 |
| cold-shock dna-binding protein family | SAMN04489864_102304 | Not Available | - | 962517 - 962720 | 7328.57 |
| long-chain fatty acid transport protein | SAMN04489864_102305 | Not Available | - | 962817 - 964322 | 54750.5 |
| hypothetical protein | SAMN04489864_102306 | Not Available | - | 964411 - 965331 | 33164.1 |
| prolyl-trna synthetase | SAMN04489864_102307 | Not Available | + | 965437 - 966909 | 55584.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.