Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| blar1 peptidase m56 | SAMN04489864_102268 | Not Available | + | 925356 - 926822 | 55572.9 |
| outer membrane receptor proteins, mostly fe transport | SAMN04489864_102269 | Not Available | - | 926892 - 929555 | 100087.0 |
| glpgli family protein | SAMN04489864_102270 | Not Available | - | 929589 - 930548 | 35501.7 |
| glpgli family protein | SAMN04489864_102271 | Not Available | - | 930864 - 931721 | 32318.4 |
| glpgli family protein | SAMN04489864_102272 | Not Available | - | 931804 - 932415 | 22821.3 |
| lsu ribosomal protein l21p | SAMN04489864_102273 | Not Available | + | 932832 - 933143 | 11464.1 |
| large subunit ribosomal protein l27 | SAMN04489864_102274 | Not Available | + | 933204 - 933617 | 14239.2 |
| geranylgeranyl diphosphate synthase, type ii | SAMN04489864_102275 | Not Available | - | 933677 - 934639 | 35796.5 |
| carboxypepd_reg-like domain-containing protein | SAMN04489864_102276 | Not Available | - | 934643 - 935830 | 45287.3 |
| ribonuclease r | SAMN04489864_102277 | Not Available | - | 935832 - 937967 | 81138.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.