Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| triosephosphate isomerase | SAMN04489864_102228 | Not Available | + | 880759 - 881520 | 27746.9 |
| ribosomal protein l11 methyltransferase | SAMN04489864_102229 | Not Available | + | 881520 - 882359 | 31401.1 |
| udp-n-acetylmuramate: l-alanyl-gamma-d-glutamyl-meso-diaminopimelate ligase | SAMN04489864_102230 | Not Available | + | 882366 - 883715 | 50699.9 |
| helix-turn-helix domain-containing protein | SAMN04489864_102231 | Not Available | + | 883743 - 884087 | 12853.5 |
| hypothetical protein | SAMN04489864_102232 | Not Available | - | 884084 - 885202 | 42968.6 |
| hypothetical protein | SAMN04489864_102233 | Not Available | - | 885272 - 885472 | 7740.35 |
| two component regulator propeller | SAMN04489864_102234 | Not Available | - | 885953 - 888892 | 113309.0 |
| two component transcriptional regulator, lyttr family | SAMN04489864_102235 | Not Available | - | 888882 - 889652 | 28835.4 |
| tat (twin-arginine translocation) pathway signal sequence | SAMN04489864_102236 | Not Available | + | 889835 - 890536 | 24986.6 |
| ferritin-like domain-containing protein | SAMN04489864_102237 | Not Available | + | 890554 - 891396 | 29756.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.